MicroGen 2026
Practical Guides
Day 0 - Pre-Workshop
Day 1
Day 2
Day 3
Day 4
Lecture Slides
Day 0
Day 1
Day 2
Day 3
Day 4
Practical Guides
Day 2
2.3 Locate & compare genes
Practical Guides
Day 0 - Pre-Workshop
0.1 Setup your workspace
0.2 Commands & Environments
Pre-Workshop Quiz
Day 1
1.1 Whole-genome sequencing - What & Why
1.2 A complete genome - How it look like?
1.3 From raw sequencing data to assemblies
Day 2
2.1 Analyse the assemblies
2.2 Long-read sequencing & Hybrid assemblies
2.3 Locate & compare genes
Day 3
3.1 Read mapping & SNP alignment
3.2 Phylogenetic tree inference
Day 4
Clinical Foundations & AMR Surveillance
Clinical Foundations & AMR Surveillance: Taxonomy Analysis
Clinical Foundations & AMR Surveillance: AMR Analysis & Summary
Actionable Diagnostics & Clinical Reasoning
Actionable Diagnostics & Clinical Reasoning: Signal Analysis
On this page
gyrA
mutations in fluoroquinolone-resistant
K. pneumoniae
Extract genes from assemblies
Gene annotation
Search & Extract
Scale-up
Gene alignment
Why align genes?
Aligning
gyrA
genes
Visualizing alignments with Seaview
DNA sequence alignment
Protein sequence alignment
Practical Guides
Day 2
2.3 Locate & compare genes
2.3 Locate & compare genes
Author
Nguyen MTS
Published
May 13, 2026
gyrA
mutations in fluoroquinolone-resistant
K. pneumoniae
Extract genes from assemblies
Gene annotation
Search & Extract
Scale-up
Gene alignment
Why align genes?
Aligning
gyrA
genes
Visualizing alignments with Seaview
DNA sequence alignment
Protein sequence alignment
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2.2 Long-read sequencing & Hybrid assemblies
Day 3